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News
Jun 2008: Fixed Zero-option in Bias-correction-by-group for whole-pop r matrix.
May 2008: Calculate pair-wise Relatedness values for large data sets (tested up to 1000 genotypes).
Mar 2008: Display selected genotypes in the Konovalov&Heg(2008b) allele frequency algorithm. Fixed loading missing alleles from a CERVUS file.
Feb 2008: Activated the KINSHIP allele frequency bias correction option for relatedness.
Feb 2008: Full Sibship Reconstruction algorithms (SDR, MS, MS2) should now work with missing alleles.
Feb 2008: Manual covering version 1 is now Ch 1. Ch 2 covers new features of version 2.
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Run the following versions via Java (TM) Web Start by just clicking on the run links. Download latest Java.
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Run the latest build of version 2 (see Manual ch2) for:
- Konovalov & Heg (2008b). Estimation of Population Allele Frequencies From Small Samples Containing Multiple Generations, Proceedings of 6th Asia-Pacific Bioinformatics Conference. 14-17 January 2008, Kyoto, Japan. Imperial College Press, London, pp321-331 [pdf].
- Konovalov & Heg (2008). A maximum-likelihood relatedness estimator allowing for negative relatedness values Molecular Ecology Resources , 8 , 256-263 [pdf].
- Konovalov (2006). Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors, Tao Jiang, Ueng-Cheng Yang, Phoebe Chen, and Limsoon Wong, editors. Proceedings of 4th Asia-Pacific Bioinformatics Conference, 13-16 February 2006, Taipei, Taiwan. Imperial College Press, London, pp7-16, [ppt] [pdf].
- Dmitry A. Konovalov, Nigel Bajema and Bruce Litow (2005) Modified SIMPSON O(n^3) algorithm for the full sibship reconstruction problem. BIOINFORMATICS, 21, 3912-3917 [abstract] [pdf].
- Dmitry A. Konovalov, Bruce Litow and Nigel Bajema (2005) Partition-distance via the assignment problem. BIOINFORMATICS, 21, 2463-2468 [pdf] [appendix]
- Archive: v2_080620, v2_080520, v2_080411, v2_080229, v2_080214, v2_070127
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Run version 1 (see Manual ch1) for:
Dmitry A. Konovalov, Clint Manning, and Michael T. Henshaw (2004)
KINGROUP: a program for pedigree relationship reconstruction and kin group assignments using genetic markers. Molecular Ecology Notes, 4, 779-782 [pdf]. |
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